Md Adnan Karim

Experience

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  Jashore University of Science and Technology

  Jul 2018 - Feb 2020

  Graduate Research Assistant

  1. Assessment of tumor proliferation rate in animal models under treatment.2. Cytological evaluations of disease models to identify cellular division.3. Screening of gene expression for mitochondrial enzymes co-responding to cancer growth restriction.4. Performing statistical analysis and managing projects from start to finish.5. Systematic studies on Microarray datasets using web-based tools and R to an inconsistent correlation of target gene expression with patient survival and molecular function correlated to cancer prognosis.6. Report writing to share findings with stakeholders. Show less

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  BioSol Centre

  Jul 2019 - Dec 2021

  Co-advisor and Researcher

  In my previous role, I volunteered as a research advisor, where I provided guidance and support to individuals pursuing research in the field of Computational Biology. I have facilitated numerous training sessions and supervised research projects, utilizing my expertise to help others succeed in their endeavors.Tools: Bioconda, R-Bioconductor, TensorFlow, Seurat, ArchR, Gene Expression Omnibus (GEO), DEGseq, affyR

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  KIST Europe

  Dec 2021 - Jul 2024

  Graduate Research Assistant (Bioinformatics)

  1. Skilled in Proteomics and Structural Bioinformatics.2. Expertise in analyzing proteomics data and performing molecular docking and molecular dynamics simulations of protein-ligand complexes.3. Validation of in vitro data.4. Maintenance of network infrastructure dedicated to computational biology research.5. Development of Graph Neural Network and Feature Engineering based Protein-Ligand binding affinity prediction models.6. Development of Bioinformatics Pipelines for MDtrajectory analysis and Mixture Toxicity prediction.7. Performing human IPS cell culture and organoid culture.Tools: R-shiny, R-Bioconductor, MySQL, CDocker, NAMD, CHARMM, NextFlow, Docker, TensorFlow Show less

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  Universität des Saarlandes

  Oct 2022 - Jul 2024

  Master Thesis Student (Bioinformatics)