Florian Mauffrey

Florian Mauffrey

Postdoctoral Fellow

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location of Florian MauffreyNyon, Vaud, Switzerland

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  • Timeline

  • About me

    Bioinformatician | Genomics analyses | Pipeline development

  • Education

    • Institut national de la recherche scientifique

      2012 - 2016
      Doctor of Philosophy (Ph.D.) Biology

      My Ph.D. research primarily focused on the investigation of the denitrification pathway of Methylophaga nitratireducenticrescens, a unique bacterium isolated from a denitrifying marine biofilm. Despite their significant role in bioreactors, marine bacterial biofilms have remained relatively underexplored in scientific research.The findings of this study revealed that Methylophaga nitratireducenticrescens played a central role in the denitrification process within the biofilm. However… Show more My Ph.D. research primarily focused on the investigation of the denitrification pathway of Methylophaga nitratireducenticrescens, a unique bacterium isolated from a denitrifying marine biofilm. Despite their significant role in bioreactors, marine bacterial biofilms have remained relatively underexplored in scientific research.The findings of this study revealed that Methylophaga nitratireducenticrescens played a central role in the denitrification process within the biofilm. However, it also became evident that collaboration with other bacterial species was necessary to achieve complete denitrification, emphasizing the importance of species interactions in this environment. Show less

    • Université de Strasbourg

      2009 - 2011
      Master’s Degree Environmental sciences and engineering Graduated with honors

      The primary objective of this research project was to assess the herbicide degradation potential in a stormwater wetland that receives agricultural runoff and to study the involved bacterial communities. Stormwater wetlands, strategically positioned at the watershed outlets, serve as natural catchment areas for pollutants carried by runoff waters. This study unveiled the significant contaminant bioremediation potential of the stormwater wetland.

    • Université de Strasbourg

      2006 - 2009
      Bachelor’s Degree Chemistry and biology
  • Experience

    • Institut national de santé publique du Québec (INSPQ)

      Jul 2016 - Nov 2017
      Postdoctoral Fellow

      Streptococcus pneumoniae serotyping tools and genome evolution- evaluation of the potential of molecular biology based methods for S. pneumoniae serotyping. Essentially focusing on WGS.- study of the impact of PCV-13 conjugate vaccine on the genome evolution of S. pneumoniae populations before and after the implementation of the vaccine.- development of a bioinformatics pipeline for WGS serotyping

    • Université de Genève

      Nov 2018 - Aug 2020
      Postdoctoral Fellow

      Prokaryotic and eukaryotic diversity in deep-sea sediments samples using 2nd generation sequencing technology (Illumina MiSeq) and 3rd generation sequencing technology (Nanopore MinION).

    • ID-Gene ecodiagnostics

      Sept 2019 - Jun 2020
      Project Leader

      In charge of water quality assessment projects using eDNA metabarcoding and high-throughput sequencing technologies.- analysis of eukaryotic communities around offshore drilling platforms in order to evaluate the platform impact on diversity

    • HUG - Hôpitaux Universitaires de Genève

      May 2021 - Nov 2022
      Bioinformatician

      Analysis of the human microbiota using molecular approaches at the Genomic research laboratory. - bioinformatics and statistical analyzes for different clinical and research projects - development of human microbiota analysis pipeline - update and curation of databases

    • CHUV / Centre hospitalier universitaire vaudois

      Nov 2022 - Jan 2025
      Bioinformatician

      Researcher for the epidemiology laboratory at the University hospital of Lausanne. - bacterial genomics of pathogens during hospital outbreaks - development of bioinformatics tools for epidemiology studies and surveillance - genomics analysis for pathogen outbreaks detection and infection control

  • Licenses & Certifications

    • Reprenez le contrôle à l'aide de Linux !

      OpenClassrooms
      Sept 2017
    • Apprenez à programmer en Python

      OpenClassrooms
      Aug 2017
  • Honors & Awards

    • Awarded to Florian Mauffrey
      Best talk Congrès Armand-Frappier 2015 Nov 2015
  • Volunteer Experience

    • Students mentoring

      Issued by Institut national de la recherche scientifique on Jan 2012
      Institut national de la recherche scientifiqueAssociated with Florian Mauffrey
    • Volunteer

      Issued by Institut national de la recherche scientifique on Nov 2015
      Institut national de la recherche scientifiqueAssociated with Florian Mauffrey
    • Volunteer

      Issued by Institut national de la recherche scientifique on Aug 2014
      Institut national de la recherche scientifiqueAssociated with Florian Mauffrey
    • Scientific populariser

      Issued by Université de Genève on Sept 2019
      Université de GenèveAssociated with Florian Mauffrey