
Florian Mauffrey
Postdoctoral Fellow

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About me
Bioinformatician | Genomics analyses | Pipeline development
Education

Institut national de la recherche scientifique
2012 - 2016Doctor of Philosophy (Ph.D.) BiologyMy Ph.D. research primarily focused on the investigation of the denitrification pathway of Methylophaga nitratireducenticrescens, a unique bacterium isolated from a denitrifying marine biofilm. Despite their significant role in bioreactors, marine bacterial biofilms have remained relatively underexplored in scientific research.The findings of this study revealed that Methylophaga nitratireducenticrescens played a central role in the denitrification process within the biofilm. However… Show more My Ph.D. research primarily focused on the investigation of the denitrification pathway of Methylophaga nitratireducenticrescens, a unique bacterium isolated from a denitrifying marine biofilm. Despite their significant role in bioreactors, marine bacterial biofilms have remained relatively underexplored in scientific research.The findings of this study revealed that Methylophaga nitratireducenticrescens played a central role in the denitrification process within the biofilm. However, it also became evident that collaboration with other bacterial species was necessary to achieve complete denitrification, emphasizing the importance of species interactions in this environment. Show less

Université de Strasbourg
2009 - 2011Master’s Degree Environmental sciences and engineering Graduated with honorsThe primary objective of this research project was to assess the herbicide degradation potential in a stormwater wetland that receives agricultural runoff and to study the involved bacterial communities. Stormwater wetlands, strategically positioned at the watershed outlets, serve as natural catchment areas for pollutants carried by runoff waters. This study unveiled the significant contaminant bioremediation potential of the stormwater wetland.

Université de Strasbourg
2006 - 2009Bachelor’s Degree Chemistry and biology
Experience
.webp)
Institut national de santé publique du Québec (INSPQ)
Jul 2016 - Nov 2017Postdoctoral FellowStreptococcus pneumoniae serotyping tools and genome evolution- evaluation of the potential of molecular biology based methods for S. pneumoniae serotyping. Essentially focusing on WGS.- study of the impact of PCV-13 conjugate vaccine on the genome evolution of S. pneumoniae populations before and after the implementation of the vaccine.- development of a bioinformatics pipeline for WGS serotyping

Université de Genève
Nov 2018 - Aug 2020Postdoctoral FellowProkaryotic and eukaryotic diversity in deep-sea sediments samples using 2nd generation sequencing technology (Illumina MiSeq) and 3rd generation sequencing technology (Nanopore MinION).

ID-Gene ecodiagnostics
Sept 2019 - Jun 2020Project LeaderIn charge of water quality assessment projects using eDNA metabarcoding and high-throughput sequencing technologies.- analysis of eukaryotic communities around offshore drilling platforms in order to evaluate the platform impact on diversity

HUG - Hôpitaux Universitaires de Genève
May 2021 - Nov 2022BioinformaticianAnalysis of the human microbiota using molecular approaches at the Genomic research laboratory. - bioinformatics and statistical analyzes for different clinical and research projects - development of human microbiota analysis pipeline - update and curation of databases

CHUV / Centre hospitalier universitaire vaudois
Nov 2022 - Jan 2025BioinformaticianResearcher for the epidemiology laboratory at the University hospital of Lausanne. - bacterial genomics of pathogens during hospital outbreaks - development of bioinformatics tools for epidemiology studies and surveillance - genomics analysis for pathogen outbreaks detection and infection control
Licenses & Certifications

Reprenez le contrôle à l'aide de Linux !
OpenClassroomsSept 2017
Apprenez à programmer en Python
OpenClassroomsAug 2017
Honors & Awards
- Awarded to Florian MauffreyBest talk Congrès Armand-Frappier 2015 Nov 2015
Volunteer Experience
Students mentoring
Issued by Institut national de la recherche scientifique on Jan 2012
Associated with Florian MauffreyVolunteer
Issued by Institut national de la recherche scientifique on Nov 2015
Associated with Florian MauffreyVolunteer
Issued by Institut national de la recherche scientifique on Aug 2014
Associated with Florian MauffreyScientific populariser
Issued by Université de Genève on Sept 2019
Associated with Florian Mauffrey
Languages
- frFrench
- enEnglish
- geGerman
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