Cyril Matthey-Doret

Experience

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  UNIL - Université de Lausanne

  Jul 2016 - Aug 2016

  Intern

  Comparative ecology between sexual and parthenogenetic chalcid wasps: • Develop a web scraper to aggregate data from the NHM hymenoptera collection • Enrich database using third-party APIs • Design and implement statistical models • Report the findings and contribute to the writing of a scientific manuscript

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  University of Lausanne

  Mar 2018 - Sept 2018

  Helpdesk support at the informatics centre: • IT support to university staff and students. • Troubleshooting hardware and software on PCs • Maintenance of machines on the campus. • Configuration and operation of different operating systems (Linux/OSX/Windows) • Experience with a ticketing service managment suite (OTRS) • QC, cleaning and visualisation of genomic data• Set up a reproducible pipeline to process and analyse whole genome sequencing data• Statistical and power analyses for projects in the group• Communicate and discuss projects with biologist collaborators and team leader• Writing and publication of a scientific manuscript (first author)

  • Helpdesk Support Assistant

    Sept 2017 - Sept 2018

  • Junior Bioinformatician

    Mar 2018 - Aug 2018
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  Institut Pasteur

  Oct 2018 - Dec 2021

  PhD researcher, Spatial Regulation of Genomes Unit

  I investigated changes in chromatin structure during infection by intracellular bacteria: • Developed algorithms to detect and compare chromatin loops and other structures in Hi-C data. • Analysed and combined omics data (ChIPseq, Hi-C, RNAseq) to identify pathways associated with structural changes in the host during bacterial infection. • Generated a chromosome level-assembly for the amoeba Acanthamoeba castellanii. • Developed a Hi-C analysis toolkit to standardise analyses in the group • Established good software practices in the lab (version control, testing, CI/CD, documentation). • Supervised 2 master students Show less

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  EPFL (École polytechnique fédérale de Lausanne)

  Jan 2022 - Dec 2023

  Lecturer

  Course: Large-scale data scienceHands-on course teaching the tools & methods used by data scientists, from researching solutions to scaling up prototypes to Spark clusters, exposing the students to the entire data science pipeline, from data acquisition to extracting valuable insights applied to real-world problems.(Master in Data Science curriculum)

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  Swiss Data Science Center

  Jan 2022 - now

  • Senior Data Science Engineer

    Jan 2023 - now

  • Data Science Engineer

    Jan 2022 - Jan 2023