
Collins Kigen

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About me
Research Scientist | Bioinformatics | NGS | Python | I apply genomics to study antimicrobial resistance and bacteriophage therapy
Education
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Jomo Kenyatta University of Agriculture and Technology (JKUAT)
2015 - 2019Bachelor of Science in Medical Biochemistry Biochemistry First class honorsProject: In silico prediction of anti-malarial activity and pharmacokinetic properties of herbal derivatives of Ajuga remota and Azadirachta indica
Experience

ICIPE - International Centre of Insect Physiology and Ecology
Apr 2019 - Jul 2022I engaged in three projects on the role of Hippobosca (keds) in the transmission of livestock pathogens, the effects of blood host meal on the vectorial competence of Glossina fuscipes fuscipes, and the surveillance of vectors for leishmaniasis in northern Kenya. Specifically, I performed field collection of keds, microscopic diagnosis for trypanosomiasis, DNA extraction from insect and livestock blood samples, PCR detection of pathogens, Sanger sequencing and analysis, experimental infection of tsetse flies with trypanosomes, in vivo culture of trypanosomes, and participated in drafting reports and manuscripts.During the 2-year period, we demonstrated the vectorial competence of keds, which were initially perceived by farmers as harmless, in the transmission of Anaplasma. We also discovered and reported the vector of visceral leishmaniasis, Phlebotomus (Artemievus) alexandri Sinton, 1928, in Kenya, and established baseline data on host-specific factors in host blood influencing the transmission of trypanosomes. Show less
Research Intern (Bioinformatics)
Oct 2021 - Jul 2022Research Assistant (Molecular biology)
Sept 2019 - Sept 2021Research Intern
Apr 2019 - Sept 2019
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Kenya Medical Research Institute (KEMRI)
Jul 2022 - nowResearch ScientistI am the genomics lead at MicroHub lab at KEMRI/WRAIR-Africa. I manage the team of molecular and bioinformatics staff in implementing the research program objectives including distributing job tasks. preparing technical reports, carrying out laboratory experiments such as DNA Extraction, PCR, Sequencing, Bioinformatics analysis, and manuscript writing. I am also in charge of organizing internal scientific seminars and journal clubs.
Licenses & Certifications
- View certificate

Participation in the National World Antimicrobial Awareness Week Youth Competiton 2022
National Planning Committee on WAAW 2022Nov 2022 - View certificate

Data Science with Python
SimplilearnMar 2022 - View certificate

Next Generation Sequencing and Bioinformatics
Walter Reed Army Institute of ResearchMar 2023 - View certificate

NGS Teaching Assistant Staff Certificate
H3ABioNetAug 2022 - View certificate

Data Science with R programming
SimplilearnApr 2022 - View certificate

Carpentries Instructor
The CarpentriesJun 2022
Honors & Awards
- Awarded to Collins KigenBest Oral Presenter in the Antimicrobial Resistance category during 13th KEMRI Annual Scientific and Health Conference KEMRI Feb 2023
- Awarded to Collins KigenVice chancellor's award JKUAT Mar 2018 For academic excellence
Volunteer Experience
Data Carpentry Instructor
Issued by The Carpentries on Jun 2022
Associated with Collins KigenTeaching Assistant - Introduction to Bioinformatics (IBT) course
Issued by H3ABioNet on Jul 2022
Associated with Collins KigenTeaching Assistant - African Genomic Medicine Training Initiative (AGMT) course
Issued by H3ABioNet on Mar 2022
Associated with Collins KigenTeaching Assistant/System Administrator - Next Generation Sequencing Bioinformatics Course 2022
Issued by H3ABioNet on Mar 2022
Associated with Collins Kigen
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