Collins Kigen

Collins Kigen

location of Collins KigenNairobi County, Kenya

Connect with Collins Kigen to Send Message

Connect

Connect with Collins Kigen to Send Message

Connect
  • Timeline

  • About me

    Research Scientist | Bioinformatics | NGS | Python | I apply genomics to study antimicrobial resistance and bacteriophage therapy

  • Education

    • Jomo Kenyatta University of Agriculture and Technology (JKUAT)

      2015 - 2019
      Bachelor of Science in Medical Biochemistry Biochemistry First class honors

      Project: In silico prediction of anti-malarial activity and pharmacokinetic properties of herbal derivatives of Ajuga remota and Azadirachta indica

  • Experience

    • ICIPE - International Centre of Insect Physiology and Ecology

      Apr 2019 - Jul 2022

      I engaged in three projects on the role of Hippobosca (keds) in the transmission of livestock pathogens, the effects of blood host meal on the vectorial competence of Glossina fuscipes fuscipes, and the surveillance of vectors for leishmaniasis in northern Kenya. Specifically, I performed field collection of keds, microscopic diagnosis for trypanosomiasis, DNA extraction from insect and livestock blood samples, PCR detection of pathogens, Sanger sequencing and analysis, experimental infection of tsetse flies with trypanosomes, in vivo culture of trypanosomes, and participated in drafting reports and manuscripts.During the 2-year period, we demonstrated the vectorial competence of keds, which were initially perceived by farmers as harmless, in the transmission of Anaplasma. We also discovered and reported the vector of visceral leishmaniasis, Phlebotomus (Artemievus) alexandri Sinton, 1928, in Kenya, and established baseline data on host-specific factors in host blood influencing the transmission of trypanosomes. Show less

      • Research Intern (Bioinformatics)

        Oct 2021 - Jul 2022
      • Research Assistant (Molecular biology)

        Sept 2019 - Sept 2021
      • Research Intern

        Apr 2019 - Sept 2019
    • Kenya Medical Research Institute (KEMRI)

      Jul 2022 - now
      Research Scientist

      I am the genomics lead at MicroHub lab at KEMRI/WRAIR-Africa. I manage the team of molecular and bioinformatics staff in implementing the research program objectives including distributing job tasks. preparing technical reports, carrying out laboratory experiments such as DNA Extraction, PCR, Sequencing, Bioinformatics analysis, and manuscript writing. I am also in charge of organizing internal scientific seminars and journal clubs.

  • Licenses & Certifications

    • Participation in the National World Antimicrobial Awareness Week Youth Competiton 2022

      National Planning Committee on WAAW 2022
      Nov 2022
      View certificate certificate
    • Data Science with Python

      Simplilearn
      Mar 2022
      View certificate certificate
    • Next Generation Sequencing and Bioinformatics

      Walter Reed Army Institute of Research
      Mar 2023
      View certificate certificate
    • NGS Teaching Assistant Staff Certificate

      H3ABioNet
      Aug 2022
      View certificate certificate
    • Data Science with R programming

      Simplilearn
      Apr 2022
      View certificate certificate
    • Carpentries Instructor

      The Carpentries
      Jun 2022
      View certificate certificate
  • Honors & Awards

    • Awarded to Collins Kigen
      Best Oral Presenter in the Antimicrobial Resistance category during 13th KEMRI Annual Scientific and Health Conference KEMRI Feb 2023
    • Awarded to Collins Kigen
      Vice chancellor's award JKUAT Mar 2018 For academic excellence
  • Volunteer Experience

    • Data Carpentry Instructor

      Issued by The Carpentries on Jun 2022
      The CarpentriesAssociated with Collins Kigen
    • Teaching Assistant - Introduction to Bioinformatics (IBT) course

      Issued by H3ABioNet on Jul 2022
      H3ABioNetAssociated with Collins Kigen
    • Teaching Assistant - African Genomic Medicine Training Initiative (AGMT) course

      Issued by H3ABioNet on Mar 2022
      H3ABioNetAssociated with Collins Kigen
    • Teaching Assistant/System Administrator - Next Generation Sequencing Bioinformatics Course 2022

      Issued by H3ABioNet on Mar 2022
      H3ABioNetAssociated with Collins Kigen