M. Nayeli Luis-Vargas

Experience

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  Laboratory of Biotechnology and Genomics, UNAM

  Jan 2018 - Sept 2019

  Data analyst internship

  • Learned and performed sequence analysis of 16S rRNA with QIIME2.• Developed pipelines for microbial ecology analysis and visualization with R through specialized libraries like phyloseq.• Did biostatistical analysis for environmental data with R, usually applying inferential statistics and clustering algorithms.

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  Winter Genomics

  Nov 2021 - Dec 2022

  Bioinformatician consultant

  • Participated in several projects about microbial ecology, in which the goal was pathogens detection, compositional taxonomy description, orenvironmental monitoring.• Developed sequence analysis using bioinformatics tools (DADA2 and QIIME2) of genetics markers (i.e., 16S, ITS, 23S) from platforms like Illuminaand Oxford Nanopore• Did microbial ecology analysis through specialized libraries in R (phyloseq, microbiome, microbiomeutilities, Tax4Fun2 etc. )• Gave advisory in metabarcoding and biostatistical projects. I used to generate a proposal for customers to develop a project in the best wayconsidering their data and limitations.• Performed data analysis using Python and R. In those projects, I was responsible for all the processes, including data cleaning, data organization,data exploration, statistical analysis/ building models, visualization, and reporting results (both written and oral).• Developed semi‑automatized bioinformatics pipelines for customers in R and Python.• Gave technical support to installing or updating bioinformatics software or specialized libraries, especially in UNIX like systems.• Developed, implemented, and participated in programming, bioinformatics, and biostatistics courses. For example, “R and RStudio for begin‑ners,” “Programming fundamentals with Python,” “Microbiome 16S”, “Principles of Machine Learning with R,” “Data Science with Python,” “Linuxfor beginners,” and “Rmarkdown for beginners.” Vis mindre