
Jose Gavalda-Garcia, PhD

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About me
PhD candidate @ RNAct
Education
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Universitat Politècnica de València (UPV)
2010 - 2014Bachelor's Degree BiotechnologyActivities and Societies: Valencia_UPV iGEM 2014 team

Vrije Universiteit Amsterdam
2014 - 2019Master's Degree Biomolecular SciencesActivities and Societies: Wushu team (Ying De Men)

Vrije Universiteit Amsterdam
2015 - 2019Master's Degree Bioinformatics & Systems BiologyActivities and Societies: Education Committee, Wushu team (Ying De Men)
Experience
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Instituto de Biología Molecular y Celular de Plantas, IBMCP (UPV - CSIC)
Sept 2013 - Oct 2014Student member in the UPV and Spanish National Research Council (CSIC) mixed iGEM team.
iGEM team member
Mar 2014 - Oct 2014Bachelor Student
Sept 2013 - May 2014

Vrije Universiteit Amsterdam
Feb 2015 - Jul 2015Masters Student InternCurrently working in a Masters Internship in the Systems Bioinformatics group under the supervision of Bas Teusink.

Vrije Universiteit Amsterdam
Sept 2016 - Oct 2016Teaching AssistantAs an Teaching Assistant for Principles/Fundamentals of Bioinformatics, my body of work is focused on managing students and contents for the course, assisting students in advancing their course projects and teaching them programming in Python.

Vrije Universiteit Amsterdam
Jan 2017 - May 2017Master ResearcherAs a Master Researcher in the Systems Bioinformatics group, I am modeling the shift from lactic fermentation to acetate, ethanol and formate production in Lactococcus lactis under the direct supervision of Willi Gottstein.

Amsterdam University College
Feb 2017 - May 2017Teaching AssistantAs a teaching assistant for Genes, Bioinformatics and Disease, I guide and evaluate bachelor students through all their practicals.

Amsterdam UMC
Sept 2017 - Jan 2019During this period, I wrote a literature review on epitope accessibility and its effect ondiagnosis of neurodegenerative diseases. Performed experiments to study the effect ofExtracellular Vesicles (EV) in Cerebrospinal Fluid for the diagnosis of neurodegenerativediseases and currently training a random forest classifier to predict EV location ofproteins given their sequence. As a Master Researcher in the Bioinformatics group at the AMC, I am developing a pipeline to link gene expression to metabolic levels, to obtain targets to treat metabolic disorders, under the supervision of Frans van der Kloet.
Masters Researcher
Jan 2018 - Jan 2019Master Researcher
Sept 2017 - Feb 2018

Vrije Universiteit Amsterdam
Nov 2017 - Dec 2017Teaching AssistantAs a teaching assistant for Algorithms in Sequence Analysis, I guide and evaluate masters students through all their practicals. For this course, I have also created a brand new practical exercise in collaboration with Cico Zhang.

Amsterdam University College
Feb 2018 - May 2018Teaching AssistantAs a teaching assistant for Genes, Bioinformatics and Disease, I guide and evaluate bachelor students through all their practicals.

Vrije Universiteit Brussel
Sept 2019 - nowPhD Candidate
DataBeers Brussels
Oct 2020 - nowCo-organizer
Licenses & Certifications
- View certificate

Databases and SQL for Data Science with Python
IBMNov 2025 
VU Fellowship Programme
Vrije Universiteit Amsterdam / VU University Amsterdam
Introduction to SQL
DataCampJan 2023
VU Fellowship Programme
Vrije Universiteit Amsterdam / VU
Honors & Awards
- Awarded to Jose Gavalda-Garcia, PhDiGEM 2014 MIT Nov 2014 Best Part Collection and Gold Medal IGEM 2014International Genetically Engineered Machine Competition (iGEM), MIT, Cambridge, MA, US.noviembre de 2014Prize obtained as student member of the IGEM Valencia UPV Team 2014.
- Awarded to Jose Gavalda-Garcia, PhDVrije Universiteit Fellowship Program (VUFP) Grant VUFP Sep 2014 Grant awarded by the Vrije Universitei Fellowship Program (VUFP) to highly-motivated international masters students. This grant also provides the students invitations to events with big companies and special opportunities for networking.
Volunteer Experience
University Summer School Teacher
Issued by Universitat Politècnica de València (UPV)
Associated with Jose Gavalda-Garcia, PhD
Languages
- spSpanish
- enEnglish
- caCatalan
- duDutch
- frFrench
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