
João C. Sequeira
Director

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About me
Head of the Scientific Computing ACF
Education

Academia de Música Valentim Moreira de Sá
2004 - 20105º grau Música - ViolinoI attended a music school where I had the opportunity to immerse myself in the world of music. I learned to play the violin and through hard work and dedication, I was able to achieve the 5th degree in music. My time at the school was not just about learning to play an instrument, but also about becoming part of a community. I was a member of the school's orchestra and had the privilege of participating in several performances. It was an unforgettable experience and I am grateful for the skills… Show more I attended a music school where I had the opportunity to immerse myself in the world of music. I learned to play the violin and through hard work and dedication, I was able to achieve the 5th degree in music. My time at the school was not just about learning to play an instrument, but also about becoming part of a community. I was a member of the school's orchestra and had the privilege of participating in several performances. It was an unforgettable experience and I am grateful for the skills and memories that I gained from my time at the music school. Show less

Universidade do Minho
2019 - 2024Doctor of Philosophy - PhD Chemical and Biological EngineeringDeveloped tools for the functional characterization of omics and meta-omics datasets.Developed agent-based models for exploring the effects of conductive nanomaterials on anaerobic digestion.Explored metagenomics, metatranscriptomic and metaproteomics datasets of mixed cultures performing anaerobic digestion. Performed proteomics analysis of a pure culture in the presence of activated carbon.Performed metatranscriptomics analysis of a mixed culture degrading butyrate into… Show more Developed tools for the functional characterization of omics and meta-omics datasets.Developed agent-based models for exploring the effects of conductive nanomaterials on anaerobic digestion.Explored metagenomics, metatranscriptomic and metaproteomics datasets of mixed cultures performing anaerobic digestion. Performed proteomics analysis of a pure culture in the presence of activated carbon.Performed metatranscriptomics analysis of a mixed culture degrading butyrate into methane. Show less

Universidade do Minho
2015 - 2017Master's degree BioinformaticsThe course provides scientific and technological training at the level of understanding and developing the main computational methods and technologies applied in solving problems in the biological and biomedical areas, in terms of their analytical, quantitative and experimental components. To this end, a multidisciplinary approach is promoted that involves content and competencies at the level of the areas of biological/biomedical sciences, computer science and technology and their… Show more The course provides scientific and technological training at the level of understanding and developing the main computational methods and technologies applied in solving problems in the biological and biomedical areas, in terms of their analytical, quantitative and experimental components. To this end, a multidisciplinary approach is promoted that involves content and competencies at the level of the areas of biological/biomedical sciences, computer science and technology and their combination.Learned the basics of simulating life in silico, Systems Biology, databases, algorithmic approaches to data analysis. Work developed on R, Python and Java. Project dedicated to InterProScan and protein domain annotation. Master thesis involved with the study of Next Generation Sequencing data, and the automation of its analysis. Show less

Universidade do Minho
2012 - 2015Bachelor's degree BiochemistryThe Biochemistry degree at the University of Minho trains professionals with a solid preparation in the various domains of Biochemistry, ranging from biomolecules to the functioning of organisms, including the use of instrumental methods in the determination of molecular structures, the organization and physiology of the cell, molecular biology and genetics, and bioinformatics. It also guarantees the acquisition of competencies such as the ability to plan, execute, analyze and report… Show more The Biochemistry degree at the University of Minho trains professionals with a solid preparation in the various domains of Biochemistry, ranging from biomolecules to the functioning of organisms, including the use of instrumental methods in the determination of molecular structures, the organization and physiology of the cell, molecular biology and genetics, and bioinformatics. It also guarantees the acquisition of competencies such as the ability to plan, execute, analyze and report independent or group research work. In the last semester, students have the opportunity to apply the knowledge acquired during the degree in a laboratory environment in a UC called Project. The faculty of the degree is qualified and engaged, with PhDs from recognized universities, and uses teaching and learning methodologies that stimulate independent and cooperative work of students. Show less
Experience

Grupo de Poesia da Universidade do Minho
Mar 2017 - Apr 2020DirectorAs the director of Grupo de Poesia da Universidade do Minho, I had the opportunity to lead and help shape the artistic direction of the group. My experiences as director were both challenging and rewarding, as I have been able to organize and execute several important events and initiatives.🪶 Artistic Residency: I had the privilege of organizing an artistic residency for the group. This was a truly unique and inspiring experience for all of us, as we were able to work with talented artists and musicians to create new and exciting interpretations of Portuguese poetry.🪶 Versos e Um Copo: I am proud to have organized two editions of the popular event "Versos e Um Copo". This event brings together multiple groups dedicated to Portuguese poetry, creating an opportunity for us to collaborate, share our passion, and celebrate our love of poetry.🪶 Financial Management: As director, I also took on the responsibility of managing the financial side of the group. This involved creating budgets, securing funding, and ensuring that the group was financially stable.Overall, my experience as director of Grupo de Poesia da Universidade do Minho was a rich and rewarding journey, filled with artistic and personal growth. I am grateful for the opportunities and experiences that I have had, and look forward to continuing to contribute to the growth and success of the group. Show less

Universidade do Minho
Sept 2017 - Oct 2019Bioinformatics ResearcherDedicated to bioinformatic approaches for meta-omics analysis of complex microbial communities.Developed MOSCA - Meta-Omics Software for Community Analysis - a pipeline that integrates metagenomics with metatranscriptomics or metaproteomics analysis

OmniumAI - Biomedical Data Sciences
Jun 2021 - Dec 2022Founding Partner🧪 As a founding partner of OmniumAI, I had the opportunity to be part of a consulting company specializing in bioinformatics and systems biology.💻 I contributed my expertise to help shape the company and worked on UnitTests for a bioinformatics application for omics data analysis.🔬 It was an exciting experience working with a talented team on cutting-edge technology and making a difference in the field.💡 I learned a lot and was able to use my skills to help the company grow.🤝 Overall, my time at OmniumAI was a great learning experience and I am proud to have been part of such a dynamic and innovative company.🌟 Here's to the future of bioinformatics and systems biology! 🚀 Show less

Newcastle University
Oct 2022 - Apr 2023Visiting ResearcherAt Newcastle University, I used Individual-Based Models to study the effects of conductive nanomaterials on anaerobic digestion. This involved simulating the behavior of individual microorganisms and their interactions within a system to understand how the addition of conductive nanomaterials affects the overall process of anaerobic digestion. I took into account various physical and chemical factors such as thermodynamics, spatial reorganization, and growth kinetics in order to more accurately predict the effects of these materials on the system. Show less

Universidade do Minho
Apr 2024 - Oct 2024Bioinformatics Researcher
HCEMM / Hungarian Centre of Excellence for Molecular Medicine
Nov 2024 - nowHead of the Scientific Computing Advanced Core Facility
Licenses & Certifications
- View certificate

4th International Conference on Biogas Microbiology
University of Santiago de CompostelaMay 2022 - View certificate

12th International Conference on Practical Applications of Computational Biology & Bioinformatics
PAAMS ConferenceJun 2018 - View certificate

IBIP19 - Integrative Biological Interpretation using Proteomics
Instituto Gulbenkian de CienciaNov 2019 - View certificate

CSS
SololearnSept 2019 - View certificate

HTML
SololearnSept 2019 - View certificate

Javascript
SololearnSept 2019 - View certificate

JQuery
SololearnSept 2019 
PDA19 - Proteomics Data Analysis 2019
Instituto Gulbenkian de CienciaJun 2018- View certificate

Python
SololearnSept 2019
Languages
- alAlemão
- inInglês
- poPortuguês
- esEspanhol
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