Experience

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  Biomedical research foundation academy of athens (brfaa)

  Jan 2016 - Jan 2017

  Diploma thesis

  Molecular modelling and MD simulations of a coated magnetic nanoparticle in contact with a lipid bilayer.Trajectory and data analyses.Thesis: Modelling of nanoparticles in contact with cell membrane models. (Translated from Greek)Honors: Received a grade of 10 on a 1-10 scale, excellent, equivalent to First-Class Honors.Supervisor: Dr. Zoe CourniaEmerged publication: https://doi.org/10.1016/j.bbagen.2020.129671

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  Freie universität berlin

  Jan 2018 - Jan 2022

  Research assistant - doctoral candidate

  Thesis: "The role of dynamic hydrogen bond networks in protonation coupled dynamics of retinal proteins".Dynamic hydrogen bond networks of retinal proteins.Graph-based analyses to predict mutation sites.Data mining and curation of large datasets of protein structures.Extended analysis across protein superfamilies to detect hydrogen bond motifs important for function.Homology model generation, atomistic MD simulations of proteins embedded in hydrated lipid environments.Supervisor: Prof. Dr. Ana-Nicoleta BondarTeaching Experience: Taught the practical exercises for the course “Advanced Theoretical Biophysics” during the winter semester 2019/2020, graduate level.Taught the practical exercises for the course “Electronic Structure Methods” during the summer semesters 2019 and 2020, graduate level. Show less

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  German institute of human nutrition

  Jan 2022 - now

  Bioinformatician

  Single-cell RNA sequencing analysisBulk RNA sequencing analysisGut microbiome analysisPathway analysisAlgorithm and pipeline developmentServer Administration