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Jacopo Negroni

Jacopo Negroni

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  • Timeline

  • About me

    Computational scientist

  • Education

    • EMBL-Hamburg and Ruprecht Karls Universität Heidelberg

      2007 - 2012
      Doctor of Philosophy (Ph.D.) Structural Bioinformatics Magna cum laude

      - Thesis title: "Validation of Crystallographic B Factors and Analysis of Ribosomal Crystal Structures"- Skills acquired:-- Solid understanding of X-ray structural models determination and interpretation-- Data mining and ability to handle large data sets-- Extensive experience with statistical methods used for the optimization and evaluation of X-ray structural models-- Independence, determination, critical and analytical thinking-- Ability to work in a multicultural… Show more - Thesis title: "Validation of Crystallographic B Factors and Analysis of Ribosomal Crystal Structures"- Skills acquired:-- Solid understanding of X-ray structural models determination and interpretation-- Data mining and ability to handle large data sets-- Extensive experience with statistical methods used for the optimization and evaluation of X-ray structural models-- Independence, determination, critical and analytical thinking-- Ability to work in a multicultural and multidisciplinary environment Show less

    • Università degli Studi di Milano-Bicocca

      2004 - 2007
      Master of Science (M.Sc.) Bioinformatics 110/110 cum laude

      - Thesis title: "Development and Automation of a Bioinformatics Protocol for the Analysis of Ligand-Protein Interactions Using High Performance Computing"- Skills acquired: -- M.Sc. classes: broad knowledge and understanding of bioinformatics tools and techniques (e.g. structural bioinformatics, sequence analysis, macroarray analysis and data mining) -- Thesis project: extensive knowledge of virtual ligand screening methodologies

    • Università degli Studi di Milano-Bicocca

      2001 - 2004
      Bachelor of Science (B.Sc.) Molecular Biotechnologies 110/110 cum laude

      - Thesis title: "Computational Study of the 3D Structural Model of Ethp1, a Protein Involved in Ethylmalonic Encephalopathy"- Skills acquired: -- B.Sc. classes: broad understanding of wet and dry biotechnological techniques -- Thesis project: extensive knowledge of protein structure prediction methods (i.e. homology modelling and threading)

  • Experience

    • Poste Italiane

      Jul 2002 - Sept 2002
      Full-time mail carrier

    • UPS

      Apr 2005 - Feb 2006
      Part-time employee, export department

    • Brembo S.p.A.

      May 2006 - Apr 2007
      Part-time CNC machine operator

    • CNR-ITB

      May 2007 - Sept 2007
      Researcher

    • EMBL

      Oct 2007 - Mar 2012

      • Postdoctoral fellow

        Mar 2012 - Mar 2012

      • Ph.D. student

        Oct 2007 - Feb 2012

    • IRB Barcelona

      May 2013 - Mar 2014
      Postdoctoral fellow

    • Bayer CropScience

      Jun 2014 - now
      Computational scientist

  • Licenses & Certifications

    • Deep Learning Specialization

      Coursera Course Certificates
      Feb 2019
      View certificate certificate

    • Sequence Models

      Coursera Course Certificates
      Feb 2019
      View certificate certificate

    • Convolutional Neural Networks

      Coursera Course Certificates
      Oct 2018
      View certificate certificate

    • Structuring Machine Learning Projects

      Coursera Course Certificates
      Feb 2018
      View certificate certificate

    • Improving Deep Neural Networks: Hyperparameter tuning, Regularization and Optimization

      Coursera Course Certificates
      Jan 2018
      View certificate certificate

    • Neural Networks and Deep Learning

      Coursera Course Certificates
      Dec 2017
      View certificate certificate

    • Machine Learning

      Coursera Course Certificates
      Dec 2016
      View certificate certificate

    • COMPLETED: Free Energy Calculations for Drug Design with FEP+

      Canvas Credentials (Badgr)
      Oct 2023
      View certificate certificate

  • Honors & Awards

    • Awarded to Jacopo Negroni
      Selected oral presentation XXII Congress and General Assembly, International Union of Crystallography (IUCr2011), Madrid, Spain Aug 2011 Title: "Validation of B factor Distributions in Protein Crystal Structures"
    • Awarded to Jacopo Negroni
      EMBL predoctoral fellowship European Molecular Biology Laboratory (EMBL)
    • Awarded to Jacopo Negroni
      INGENIO research fellowship Regione Lombardia